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Studying phase transition temperature of pentadecane using MD simulations

SOFTWARE

We share Bioinformatics software and data to facilitate research.  

AxPEP | AcPEP | BESTox | SSL-GCN |LigTMap | PSOVina | GWOVina | TMDIM | ProtPOS | PyMOL mControl

DATASET

AmPEP/AxPEP | SAMFF

AmPEP | AxPEP | AcPEP 

Sequence-based classification of antimicrobial and anticancer peptides

SSL-GCN

Chemical toxicity prediction for nuclear receptor signals and stress response indicators

BESTox

Convolutional neural network regression model for acute oral toxicity prediction

LigTMap

Target and activity prediction server for small molecules

PSOVina

Fast protein-ligand docking tool based on PSO and AutoDock Vina

GWOVina

Fast protein-ligand docking tool based on GWO and AutoDock Vina

SAMFF

A refined empirical force field to model protein-SAM interactions based on GAFF and AMBER14 



TMDIM (the server is retired)

Structure prediction of TM domains of bitopic dimers

ProtPOS

Fast prediction of protein preferred  orientation on a surface

PyMOL mControl

Mobile controller for molecular visualization